PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539221.1_FGP001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ARF
Protein Properties Length: 618aa    MW: 67392.6 Da    PI: 6.4122
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539221.1_FGP001genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.11.6e-2343144199
                        EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                        f k+lt+sd+++ g +++p+ +ae++       ++++ +   +  +d +g  W++++iyr++++r++lt+GW+ Fv+ ++L +gD++vF+  
  KN539221.1_FGP001  43 FAKTLTQSDANNGGGFSVPRFCAETIfpeldysSEPPVQ--SVCAKDVHGVDWTFRHIYRGTPRRHLLTTGWSPFVNKKQLTAGDSIVFM-- 130
                        89*********************999****987656666..5************************************************.. PP

                        SSSEE..EEEEE-S CS
                 B3  86 grsefelvvkvfrk 99 
                        ++++++ +v+++r+
  KN539221.1_FGP001 131 RDEGGNIHVGLRRA 144
                        5699*******996 PP

2Auxin_resp118.26.7e-39199282183
         Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                        aa++a+++++Fev+Y+Prast+eF+v+++ v++a+ v++++GmRfkmafetedss++++ +Gtv+gv+++dpvrWp+S+Wr+L+
  KN539221.1_FGP001 199 AATRATSGQPFEVLYYPRASTPEFCVRAAAVRTAMAVQWCPGMRFKMAFETEDSSRISWfMGTVAGVQASDPVRWPQSPWRLLQ 282
                        68899*****************************************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.8E-3636146IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.05E-2839145IPR015300DNA-binding pseudobarrel domain
CDDcd100172.25E-1842143No hitNo description
PROSITE profilePS5086312.29443145IPR003340B3 DNA binding domain
SMARTSM010198.8E-2043145IPR003340B3 DNA binding domain
PfamPF023621.3E-2143144IPR003340B3 DNA binding domain
PfamPF065073.5E-33199282IPR010525Auxin response factor
PROSITE profilePS5174518.843532612IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 618 aa     Download sequence    Send to blast
MADPDTDEVF ARIRLVPLRA AEDGDVEDDG AAAGEEHEKP ASFAKTLTQS DANNGGGFSV  60
PRFCAETIFP ELDYSSEPPV QSVCAKDVHG VDWTFRHIYR GTPRRHLLTT GWSPFVNKKQ  120
LTAGDSIVFM RDEGGNIHVG LRRAKRGFCS IGGDDESLSS MPGWDQYRGL MRRNNATATA  180
TGGRTPPKGK VPPENVLTAA TRATSGQPFE VLYYPRASTP EFCVRAAAVR TAMAVQWCPG  240
MRFKMAFETE DSSRISWFMG TVAGVQASDP VRWPQSPWRL LQVTWDEPEL LQNVKRVCPW  300
LVELVSSMPN LHLPSFSPPR KKPRNPPYAE LPLEGQIFTG PVFPPNPMAH DHHHHHGFPF  360
LPFPDSSAQP AGIQGARHAQ FASPFPEFHI GNLQPNLMLY AGIRLPPADR AAPAPRPPRI  420
IISTDLTIGS PGKPDDAACS PSSGGKKIDD TKPRGFLLFG QAILTEEQIK NGNSDGRPAS  480
PNWDAEKAPN TSEGSDSGVT QGSPTKNTTP SWSLPYFGGN NISRASEYEL NPGQCKVFVE  540
SEAVGRSLDL SALSSFEELY ACLSDMFSIG SDELRSHLVY RSPAGEVKHA GDEPFCSFVK  600
SARKLRILTD AGSDNLGD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-662303117388Auxin response factor 5
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1007950.0AK100795.1 Oryza sativa Japonica Group cDNA clone:J023121F07, full insert sequence.
GenBankAL6629580.0AL662958.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0019D11, complete sequence.
GenBankAL7316290.0AL731629.2 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0061C13, complete sequence.
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankCP0126120.0CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633845.10.0PREDICTED: auxin response factor 10
SwissprotQ7XKK60.0ARFJ_ORYSJ; Auxin response factor 10
SwissprotQ01I350.0ARFJ_ORYSI; Auxin response factor 10
TrEMBLA0A0D9Y8Q90.0A0A0D9Y8Q9_9ORYZ; Auxin response factor
STRINGBGIOSGA016767-PA0.0(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51637152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28350.11e-162auxin response factor 10